Adam Roberts
University of California, Berkeley
Computer Science
adarob-at-eecs.berkeley.edu

Journal Publications

View more detailed info at my Google Scholar page.

  • Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley D, Pimentel H, Salzberg S, Rinn J, and Pachter L. (2011). Differential Gene and Transcript Expression Analysis of RNA-Seq Experiments with TopHat and Cufflinks. Nature Protocols, In Press. [link]
  • Roberts A and Pachter L. (2011). RNA-Seq and find: entering the RNA deep field. Genome Medicine, 3(74). [link] [pdf]
  • Roberts A, Pimentel H, Trapnell C, and Pachter L. (2011). Identification of novel transcripts in annotated genomes using RNA-Seq. Bioinformatics, 27(17). [link]
  • Roberts A, Trapnell C, Donaghey J, Rinn JL, and Pachter L. (2011). Improving RNA-Seq expression estimates by correcting for fragment bias. Genome Biology, 12(R22). [link]
  • Bradley R, Roberts A, Smoot M, Juvekar J, Dewey C, Holmes I, and Pachter L. (2009). Fast Statistical Alignment. PLoS Computational Biology, 5(5). [link]
  • Pan F, Roberts A, McMillan L, Threadgill D, and Wang W. (2008). Sample Selection for Maximal Diversity Proceedings of the 2007 Seventh IEEE International Conference on Data Mining, 262-271. [link]
  • Roberts A, Pardo-Manuel F, Wang W, McMillan L, and Threadgill D. (2007). The polymorphism architecture of mouse genetic resources elucidated using genome-wide resequencing data: implications for QTL discovery and systems genetics. Mammalian Genome, 18(6-7). [link]
  • Roberts A, McMillan L, Wang W, Parker J, Rusyn I, and Threadgill D. (2007). Inferring missing genotypes in large SNP panels using fast nearest-neighbor searches over sliding windows. Proceedings of the 15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2007), 23(13). [link]