CS267 Assignment 1: Optimize Matrix Multiplication

Due Date: Saturday February 12, 2011 at 11:59PM

Problem

Your task is to optimize matrix multiplication code to run fast on a single processor core of NERSC Franklin cluster (please read the access instructions). Semantics of the matrix multiplication is:

  for i = 1 to n
    for j = 1 to n
      for k = 1 to n
        C[i,j] = C[i,j] + A[i,k] * B[k,j]
      end
    end
  end
where A, B and C are n-by-n matrices. You need to write a dgemm.c that implements this semantics and exposes it through the following C interface (contact the GSIs if you want to use a different language):
  void square_dgemm( int n, double *A, double *B, double *C ).

The matrices are stored in column-major order, i.e. entry Cij is stored at C[i+j*M]. The correctness of implementation is verified using an element-wise error bound that holds for the naive matrix multiply:

  |square_dgemm(n,A,B,0) - A*B| < eps * n * |A| * |B|.
This bound also holds for any other algorithm that does the same floating point operations as the naive algorithm but in different order. However, this may exclude using some other algorithms such as Strassen's. In the formula, eps = 2–52 = 2.2 * 10–16 is the machine epsilon.

We provide two simple implementations for you to start with: a naive three-loop implementation similar to shown above and a more cache-efficient blocked implementation.

The necessary files are in matmul.tar. Included are the following:

dgemm-naive.cpp
A naive implementation of matrix multiply using three loops,
dgemm-blocked.cpp
A simple blocked implementation of matrix multiply,
dgemm-blas.cpp
A wrapper for vendor's optimized implementation of matrix multiply,
benchmark.cpp
The driver program that measures the runtime and verifies the correctness by comparing with ACML,
Makefile
A simple makefile to build the executables,
job-blas, job-blocked, job-naive
Scripts to run the executables on Franklin compute nodes. For example, type "qsub job-blas" to benchmark the BLAS version.
This code uses ACML library, so you may need to type "module load acml" before compiling the code on Franklin to set up the paths. See instructions in the Makefile on compiling the code with different compilers available on Franklin. A detailed help on using the programming environment can be found on the NERSC pages.

The target processor is Quad Core AMD Opteron. Its cores have separate 128-bit wide pipelines for addition and multiplication clocked at 2.3GHz. This yields 2 double precision (i.e. 64-bit) flops per pipeline * 2 pipelines * 2.3 GHz = 9.2 Gflop/s. The following graph shows the performance of the supplied naive and blocked implementations (if compiled using PGI compiler with -fastsse option) as a fraction of this peak:


Your goal is to get a higher performance and understand how you did that. Ideally, you would match or surpass the performance of the BLAS implementation (please check how fast it is), but this is not required.

Submission

The assignment should be done in teams that have been assigned. Submit your optimized dgemm.c (or dgemm.cpp), Makefile (for compiler options) and a write-up. The write-up should contain

For the last requirement, you may run your optimized implementation on another NERSC cluster, such as Bassi (POWER 5 processors) or DaVinci (Itanium 2 processors), on your laptop, etc.

Your grade will mostly depend on two factors:

  1. performance sustained by your codes on Franklin,
  2. explanations of the performance features you observed.

Useful References

SSE Intrinsics: Technical Publications: Technical Documentation: You are also welcome to learn from the source code of state-of-art BLAS implementations such as GotoBLAS and ATLAS. However, you should not reuse those codes in your submission.
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