Dan Adkins

Contact Information

• Email: dadkins (* at *) gmail.com

Papers

• Securing User-controlled Routing Infrastructures
  by Karthik Lakshminarayanan, Daniel Adkins, Adrian Perrig, and Ion Stoica.
  IEEE/ACM Transactions on Networking, Vol. 16, No. 3, June 2008, pp. 549-561.
  [pdf] Abstract


• Towards a Secure Indirection Infrastructure (Brief Announcement)
  by Karthik Lakshminarayanan, Daniel Adkins, Adrian Perrig, and Ion Stoica.
  In Proceedings of ACM PODC'04, St John's, Newfoundland, Canada, July 2004
  [pdf] Abstract


• Internet Indirection Infrastructure
  by Ion Stoica, Daniel Adkins, Shelley Zhuang, Scott Shenker, and Sonesh Surana.
  IEEE/ACM Transactions on Networking, Vol. 12, No. 2, April 2004, pp. 205-218.
  An early version appears in Proceedings of ACM SIGCOMM'02, Pittsburgh, PA, August 2002
  [pdf] Abstract


• Taming IP Packet Flooding Attacks
  by Karthik Lakshminarayanan, Daniel Adkins, Adrian Perrig, and Ion Stoica.
  In Second Workshop on Hot Topics in Networks (HotNets-II), Cambridge, MA, November 2003
  [pdf] Abstract

Software (unsupported)

• Fast Phylogeny Inference
  [bitbucket]


• Gene-Order Phylogeny
  [bitbucket]


• Internet Indirection Infrastructure
  Old prototype [tar.gz]

Thesis

• A Minimum Spanning Tree Framework for Inferring Phylogenies
  by Daniel Adkins
  Ph.D. Thesis
  University of California, Berkeley, Department of Electrical Engineering and Computer Science
  December 2010
  [pdf]

Unpublished Papers

• Inferring Gene Order Phylogenies by Learning Ancestral Sequences
  Submitted to and rejected from RECOMB 2007, WABI 2010, and RECOMB 2011
  [pdf]


• A Simple Quadratic Time Algorithm for Accurate Phylogeny Reconstruction from Logarithmic-Sized Data
  Submitted to and rejected from RECOMB 2007