This site hosts Matlab code for the JCB paper:
Nonparametric Combinatorial Sequence Models.
F. L. Wauthier and M. I. Jordan and N. Jojic.
Journal of Computational Biology, 2011.
Matlab software: [zip file]
[gzip'ed tarball].
Authors: Fabian Wauthier flw (at) cs.berkeley.edu
Nebojsa
Jojic jojic (at) microsoft.com (Corresponding author)