Current version

0.1 July 2009

Description

Overpaint is a C++ package that can jointly estimate crossover rates, gene conversion rates and mean conversion tract lengths from population SNP dataset.

Download

Overpaint is distributed under the GNU General Public License.

1. • overpaint-0.1.tar.gz

Installation

1. • Overpaint has been tested under MAC OS X.
   

2. • Instructions for installation are in the README file.
   

3. • To compile the source code, gsl needs to be installed.

Citation

J. Yin, M. I. Jordan, Y. S. Song, Joint estimation of gene conversion rates and mean conversion tract lengths from population SNP data, Proceedings of ISMB 2009, Bioinformatics, Vol. 25, i231-i239, 2009. [pdf]

Contact

junming at cs fullstop berkeley fullstop edu